From The Zhang Lab
Revision as of 19:09, 7 July 2016 by Dong Zou
- Research Associate, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China, 2015.1 − Present
- Research Assistant, Beijing Institute of Genomics, Chinese Academy of Sciences (CAS), Beijing, China 2009.9−2014.12
- B.S. in Computer Science, Central South University of Forestry and Technology, Changsha, China 2009
- Biological Big Data Integration
- Biological Database
- Web System Development
Web System and Database
BIG Data Center
- Description: The BIG Data Center advances life & health sciences by providing open access to a variety of resources, with the aim to translate big data into big discoveries and support activities in both academia and industry.
- Availability: http://bigd.big.ac.cn
MethBank - V2
- Description: MethBank is a repository of whole-genome single-base nucleotide methylomes for not only model organisms but also economically important species based on NGS Bisulfite-sequencing data.
- Availability: http://bigd.big.ac.cn/methbank
IC4R - Rice Variation Database
- Description: A database for storing, browsing and mining Single Nucleotide Polymorphisms (SNPs) based on a large variety of rice cultivars.
- Availability: http://variation.ic4r.org
IC4R - Rice Expression Database
- Description: A database for storing, browsing and mining NGS RNA-Seq data of rice.
- Availability: http://expression.ic4r.org
IC4R - Rice Genome Browser
- Description: A web system for integration and visualization of a variety of rice data.
- Availability: http://visual.ic4r.org/view/index.html?data=data/Oryza_sativa
MethBank: DNA Methylome Programming Database
- Description: A database for storing, browsing and mining single-base nucleotide whole-genome methylation data of early embryos spanning different animals.
- Availability: http://www.dnamethylome.org
- Description: A web system for Genomics, Proteomics & Bioinformatics(GPB; ISSN 1672-0229, CN 11-4926/Q)
- Availability: http://gpb.big.ac.cn
- Zou,D.# as co-first author in The IC4R Project Consortium(2016) Information Commons for Rice. Nucleic Acids Research
- Zou,D., Ma,L.N., Yu,J.,Zhang,Z. (2015) Biological Databases for Human Research. Genomics,Proteomics & Bioinformatics.
- Zou,D., Sun,S., Li,R, Liu,J., Zhang,J. and Zhang,Z. (2015) MethBank: a database integrating next-generation sequencing single-base-resolution DNA methylation programming data. Nucleic Acids Research.
- Ma,L.N., Li,A., Zou,D., Xu,X.J., Xia,L.,Yu,J., Bajic,V.B. and Zhang,Z.(2015) LncRNAWiki: harnessing community knowledge in collaborative curation of human long non-coding RNAs. Nucleic Acids Research.
- Zhang,Z.*, Sang,J., Ma,L.N., Wu,G., Wu,H., Huang,D.W., Zou,D., Liu,S.Q., Li,A., Hao,L.L., Tian,M., Xu,C., Wang,X.M., Wu,J.Y., Xiao,J.F., Dai,L., Chen,L.-L., Hu,S.N., and Yu, J. (2013) RiceWiki: a wiki-based database for community curation of rice genes, Nucleic Acids Research.
- Dai,L., Xu,C., Tian,M., Sang,J., Zou,D., Li,A., Liu,G.C., Chen,F., Wu,J.Y., Xiao,J.F., Wang,X.M., Yu,J., and Zhang,Z.* (2013) Community intelligence in knowledge curation: an application to managing scientific nomenclature, PLoS ONE.