Xingjian Xu

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Xingjian XU, Ph.D. student

(pronounced as Hsing-Chien Hsu)

CAS Key Laboratory of Genome Sciences and Information

Beijing Institute of Genomics, Chinese Academy of Sciences

No.1 Beichen West Road

Chaoyang District, Beijing 100101

China

Email: xuxingjian#big.ac.cn

Tel.: +86-10-84097298

Supervisor: Dr. Zhang Zhang

Github: dotswing

LinkedIn: Xingjian XU

Mendeley: Xingjian XU

Steam: l800etc


For we walk by faith, not by sight. -- Corinthians 5:7


Contents

Education

  • Ph.D. candidate in Bioinformatics, Beijing Institute of Genomics, Chinese Academy of Sciences (CAS), China, 2014
  • M.S. in Computer science, Inner Mongolia Normal University, China, 2011
  • B.S. in Wildlife and Nature Reserve Management, Northern East Forestry University, China, 2006

Research Interests

  • Big Data Integration and Analytics
  • Cloud Computing based on Hadoop/Spark
  • NGS Data Mining and Machine Learning

Web Systems

IC4R Sequences

  • Description: Main site for IC4R project, storing genome annotation data for rice sequences.
  • Availability: http://ic4r.org

Plant Homolog

  • Description: A database for storing and browsing the homolog gene groups of 17 plant species.
  • Availability: http://homolog.ic4r.org

QOMO

  • Description: A cloud platform for biological data storage, analysis and sharing. It integrates data and analysis tools in one stop; data is stored in a distributed manner and computations are run in parallel in multiple nodes. By adding more nodes into the cluster, it is capable of accommodating the growing needs of storage and computation.
  • Availability: http://cloud.big.ac.cn

Related Activities


Journal Publication

  • Xu, X.J., Ji, Z.H, Zhang, Z.* CloudPhylo: a fast and scalable tool for phylogeny reconstruction, submitted.
  • Xu, Xingjian.# as co-first author in The IC4R Project Consortium(2016) Information Commons for Rice. Nucleic Acids Research Pubmed.png
  • Ma Lina#, Li Ang#, Zou Dong, Xu Xingjian, Xia Lin, Yu Jun, Bajic B. Vladimir and Zhang Zhang. LncRNAWiki: harnessing community knowledge in collaborative curation of human long non-coding RNAs. Nucleic Acids Research. doi:10.1093/nar/gku1167
  • Xu, Xingjian, et al. "A Novel Parallel Approach of Cuckoo Search using MapReduce." 2014 International Conference on Computer, Communications and Information Technology (CCIT 2014). Atlantis Press, 2014.
  • JI Zhao- hua, ZHENG Ai-jun, XU Xing-jian, QIU Jiu-kui, LIU Fu.Comparison Among Statistical Methods on the Differential Gene Expression Detecting. the 4th international Conference of Bionic Engineering, ICBE2013
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