Lina Ma

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Lina Ma, PH.D.
Key Laboratory of Genome Sciences and Information
Beijing Institute of Genomics, Chinese Academy of Sciences
NO.1 Beichen West Road
Chaoyang District, Beijing 100101
China
Email: malina(AT)big.ac.cn


Contents

PROFESSIONAL EXPERIENCE

  • Assistant Research Fellow, Beijing Institute of Genomics, Chinese Academy of Sciences (CAS), Beijing, China 2012.3−Present
  • Assistant Research Fellow, Zhoushan Hospital, Zhejiang, China 2010.6−2012.2

EDUCATION

  • Ph.D. in Bioinformatics, Beijing Institute of Genomics, Chinese Academy of Sciences (CAS), China, 2010
  • B.S. in Biotechnology, Ocean University of China, China, 2005

RESEARCH INTERESTS

  • Function and Molecular Evolution of Non-coding RNA
  • Transcriptome Data Integration and Analysis Platform
  • Translational Selection in Multicellular Animals

PROFESSIONAL ACTIVITIES

  • Reviewer: PLoS ONE, Biology Direct, SCIENCE CHINA Life Sciences, BioMed Research International (formerly titled Journal of Biomedicine and Biotechnology), GIW(International Conference on Genome Informatics)2013, GIW(International Conference on Genome Informatics)2014
  • Poster: 2013 Transcriptional Regulation in Eukaryotes, Cold Spring Harbor Laboratory, A knowledge base for community curation of human long non-coding RNAs.
  • Poster: 2013 International Conference of Genomics, A knowledge base for community curation of human long non-coding RNAs.
  • Poster: SMBE 2014, Translational selection in human: more pronounced in housekeeping genes.
  • Poster: SMBE 2014, Heterogeneity of translational selection in human tissues.
  • Poster: Biocuration 2015, LncRNAWiki: harnessing community knowledge in collaborative curation of human long non-coding RNAs.
  • Poster: International Conference of Genomics 2015, Database Commons: a curated catalogue of biological databases (The third poster prize).

FUNDING

National Natural Science Foundation of China (Grant No. 31200978 to LNM): Building transcriptomic interactive networks for miR-21-related mechanisms in cancer cells based on deep RNA-seq (Ribo-minus) data, 2013-2015.

BOOK

营养组学-第三章转录组学(ISBN 978-7-5679-0383-8). 中国协和医科大学出版社, 北京: 2015.

“Nutritionomics”-Chapter3 Transcriptome(ISBN 978-7-5679-0383-8). Peking Medical Union College Press, 2015.

JOURNAL PUBLICATIONS

  1. Ma Lina et al.. Database Commons: a curated catalogue of biological databases. (In preparation)
  2. Ma Lina as one of the first authors in BIG Data Center Members (2017) The BIG Data Center: from deposition to integration to translation, Nucleic Acids Res, accepted and in press. Pubmed.png
  3. Ma Lina listed in The RNAcentral Consortium. (2017) RNAcentral: a comprehensive database of non-coding RNA sequences., Nucleic Acids Res, [Epub ahead of print]. Pubmed.png
  4. Yin, H.Y, Wang, G.Y., Ma, L.N., Yi, S.V., Zhang, Z.* (2016) What signatures dominantly associate with gene age? Genome Biology and Evolution, [Epub ahead of print].Pubmed.png
  5. Yin, H.Y., Ma, L.N., Wang, G.Y., Li, M.W., Zhang, Z.*. (2016) Old genes experience stronger translational selection than young genes, Gene, 590(1):29–34.Pubmed.png
  6. The IC4R Project Consortium. Information Commons for Rice (IC4R) (2016) Nucleic Acids Research.doi: 10.1093/nar/gkv1141.
  7. Zou Dong#, Ma Lina#, Yu Jun, Zhang Zhang. (2015) Biological databases for human research. Genomics Proteomics Bioinformatics. pii: S1672-0229(15)00007-8. doi: 10.1016/j.gpb.2015.01.006.
  8. Ma Lina#, Li Ang#, Zou Dong, Xu Xingjian, Xia Lin, Yu Jun, Bajic B. Vladimir and Zhang Zhang. (2015) LncRNAWiki: harnessing community knowledge in collaborative curation of human long non-coding RNAs. Nucleic Acids Research 43:D187-92. LncRNAWiki
  9. Ma Lina, Cui Peng, Zhu Jiang, Zhang Zhihua, Zhang Zhang. (2014) Translational selection in human: more pronounced in housekeeping genes. Biology Direct 9:17. DOI: 10.1186/1745-6150-9-17.Highly Accessed
  10. Zhang Zhang, Sang Jian, Ma Lina, Wu Gang, Wu Hao, Huang Dawei, Zou Dong, Liu Siqi, Li Ang, Hao Lili, Tian Ming, Xu Chao, Wang Xumin, Wu Jiayan, Xiao Jingfa, Dai Lin, Chen Ling-ling, Hu Songnian, Yu Jun. (2013) RiceWiki: a wiki-based database for community curation of rice genes. Nucleic Acids Research 42, D1222-1228.
  11. Ma Lina, Bajic B. Vladimir, Zhang Zhang. (2013) On the classification of long non-coding RNAs.RNA Biology 10: 925-33.
  12. Ma Lina, Nie Linghu, Liu Jing, Zhang Bing, Song Shuhui, Sun Min, Yang Jin, Yang Yadong, Fang Xiangdong, Hu Songnian, Zhao Yongliang, Yujun. (2013) An RNA-seq-based Gene Expression Profiling of Radiation-induced Tumorigenic Mammary Epithelial Cells. Genomics Proteomics Bioinformatics 10: 326-335.
  13. Ma Lina, Huang Yanyan, Zhu Wangyu, Zhou Shiquan, Zhou Jihang, Zeng Fang, Liu Xiaoguang, Zhang Yongkui, Yu Jun. (2011) An Integrated Analysis of miRNA and mRNA Expressions in Non-Small Cell Lung Cancers. PLoS One 6: e26502.
  14. Ma Lina, Meng Qingshu, Cheng Weihung, Sung Yunju, Tang Petrus, Hu Songnian, and Yu Jun. (2011) Involvement of the GP63 protease in infection of Trichomonas vaginalis. Parasitology Research 109: 71-79.
  15. Ma Lina, Chen Kaifu, Meng Qingshu, Liu Qingyou, Tang Petrus, Hu Songnian, Yu Jun. (2011) An evolutionary analysis of trypanosomatid GP63 proteases. Parasitology Research 109: 1075-1084.
  16. Meng Qingshu, Chen Kaifu, Ma Lina, Hu Songnian, Yu Jun. (2011) A systematic identification of Kolobok superfamily transposons in Trichomonas vaginalis and sequence analysis on related transposases. Journal of Genetics and Genomics 38: 63-70.
  17. Liu Xiaoguang, Zhu Wangyu, Huang Yanyan, Ma Lina, Zhou Shiquan, Wang Yekai, Zeng Fang, Zhou Jihang, Zhang Yongkui. (2011) High expression of serum miR-21 and tumor miR-200c associated with poor prognosis in patients with lung cancer. Medical Oncology 29: 618-26.
  18. Zeng Fang, Li Yuncheng, Chen Gang, Zhang Yongkui, Wang Yekai, Zhou Shiquan, Ma Lina, Zhou Jihang, Huang Yanyan, Zhu Wangyu, Liu Xiaoguang. (2011) Nicotine inhibits cisplatin-induced apoptosis in NCI-H446 cells. Medical Oncology 29: 364-373.
  19. Chen Kaifu, Meng Qingshu, Ma Lina, Liu Qingyou, Tang Petrus, Chiu Chungshung, Hu Songnian, and Yu Jun. (2008) A novel DNA sequence periodicity decodes nucleosome positioning. Nucleic Acids Research 36:6228-6236.
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