Lili Hao

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Lili Hao, PH.D.
Key Laboratory of Genome Sciences and Information
Beijing Institute of Genomics, Chinese Academy of Sciences
NO.1 Beichen West Road
Chaoyang District, Beijing 100101
Email: haolili(AT)
ORCID: 0000-0003-3432-7151



  • Assistant Research Fellow, Beijing Institute of Genomics, Chinese Academy of Sciences, China, 2011 - Present


  • Ph.D. in Bioinformatics, Beijing Institute of Genomics, Chinese Academy of Sciences, China, 2011
  • B.S. in Bioengineering, Harbin Institute of Technology, China, 2005


  • Curation of rice omics data
  • Transcriptome data integration and analytics
  • Effects of transposable elements on rice gene regulatory network
  • RNA editing in Plants


  • GEN (Gene Expression Nebulas)
  • IC4R (Information Commons for Rice)


National Natural Science Foundation of China (Grant No. 31100915): Transposable activity of mStoe10 and its polymorphism in cultivated and wild rice. (2012-2014) Project leader

Strategic Priority Research Program of the Chinese Academy of Sciences (Grant No. XDA08020102): Molecular model design and breeding. (2013-2017) Participant


  1. Talk: Gene Expression Nebulas. The 1st Scientific Advisory Board (SAB) Meeting. Beijing, Jan 15-18, 2017
  2. Poster: The BIG Data Center: from deposition to integration to translation. The 6th National Plant Protein Research Conference. Haikou, Dec 17-21, 2016
  3. Talk: Gene Expression Nebulas. 2016 Big Data Forum for Life and Health Sciences. Dec 5-8, 2016
  4. Poster: The BIG Data Center: from deposition to integration to translation. The 7th National Conference on Bioinformatics and System Biology. Chengdu, Oct 6-9, 2016
  5. Poster: Rice Expression Database (RED): an integrated RNA-Seq-derived gene expression database for rice. The 7th National Conference on Bioinformatics and System Biology. Chengdu, Oct. 6-9, 2016
  6. Poster: Information Commons for Rice (IC4R). International Conference of Genomics. Xi'an, Oct 23-25 2015
  7. Poster: Information Commons for Rice (IC4R). The 13 th International Symposium on Rice Functional Genomics. Wuhan, Aug 19-22, 2015
  8. Poster: Information Commons for Rice (IC4R). The 8th International Biocuration Conference. Beijing, Apr 22-25, 2015

PUBLICATIONS (# Co-first author)

  1. Hao L as co-first authors in BIG Data Center Members: The BIG Data Center: from deposition to integration to translation. Nucleic Acids Res 2016, gkw1060.
  2. Zhao W, Zhang S, Tang B, Chen T, Hao L, Sang J, Li R, Xiao J, Zhang Z. Constructing the international database management system for omics big data. Big Data Research 2016, 2(6):43-52. (In Chinese)
  3. Liang F, Hao L, Wang J, Shi S, Xiao J, Li R. BS-RNA: An efficient mapping and annotation tool for RNA bisulfite sequencing data. Computational Biology and Chemistry 2016, 65:173-177.
  4. Liu H, Deng Z, Chen J, Wang S, Hao L, Li D. Genome-wide identification and expression analysis of the metacaspase gene family in Hevea brasiliensis. Plant Physiol Biochem. 2016 Aug;105:90-101.
  5. The IC4R Project Consortium, Hao L#, Zhang H, Zhang Z, Hu S, Xue Y. Information Commons for Rice (IC4R). Nucleic Acids Research 2016;44 (D1):D1172-D1180.
  6. Li D, Hao L#, Liu H, Zhao M, Deng Z, Li Y, et al. Next-generation sequencing, assembly and comparative analyses of the latex transcriptomes from two elite Hevea brasiliensis varieties. Tree Genetics & Genomes 2015;11:98
  7. Liu X, Hao L#, Li D, Zhu L, Hu S. Long Non-coding RNAs and Their Biological Roles in Plants. Genomics, Proteomics & Bioinformatics 2015;13:137.
  8. Luo M, Hao L#, Hu F, Dong Y, Gou L, Zhang W, et al. MicroRNA profiles and potential regulatory pattern during the early stage of spermatogenesis in mice. Science China Life Sciences 2015;58:442-50.
  9. Yang C, Li D, Liu X, Ji C, Hao L, Zhao X, et al. OsMYB103L, an R2R3-MYB transcription factor, influences leaf rolling and mechanical strength in rice (Oryza sativa L.). BMC Plant Biol 2014;14:158.
  10. Zhang Z, Sang J, Ma L, Wu G, Wu H, Huang D, Zou D, Liu S, Li A, Hao L, Tian M, et al. RiceWiki: a wiki-based database for community curation of rice genes. Nucleic Acids Research 2013;42:D1222-1228.
  11. Zhang X, Hao L#, Meng L, Liu M, Zhao L, Hu F, et al. Digital gene expression tag profiling analysis of the gene expression patterns regulating the early stage of mouse spermatogenesis. PLoS One 2013;8:e58680.
  12. Zhang R, Hao L, Wang L, Chen M, Li W, Li R, et al. Gene expression analysis of induced pluripotent stem cells from aneuploid chromosomal syndromes. BMC Genomics 2013;14 Suppl 5:S8.
  13. Zhou T, Benda C, Duzinger S, Huang Y, Li X, Li Y, Guo X, Cao G, Chen S, Hao L, Chan YC, et al. Generation of induced pluripotent stem cells from urine. J Am Soc Nephrol 2011;22:1221-8.
  14. Liu F, Zhang H, Wu G, Sun J, Hao L, Ge X, et al. Sequence Variation and Expression Analysis of Seed Dormancy- and Germination-Associated ABA- and GA-Related Genes in Rice Cultivars. Front Plant Sci 2011;2:17.
  15. An J, Wan H, Zhou X, Hu DN, Wang L, Hao L, et al. A comparative transcriptomic analysis of uveal melanoma and normal uveal melanocyte. PLoS One 2011;6:e16516.
  16. Hao L, Ge X, Wan H, Hu S, Lercher MJ, Yu J, et al. Human functional genetic studies are biased against the medically most relevant primate-specific genes. BMC Evol Biol 2010;10:316.
  17. Wang L, Hao L, Li X, Hu S, Ge S, Yu J. SNP deserts of Asian cultivated rice: genomic regions under domestication. J Evol Biol 2009;22:751-61.
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