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Contents

Lab Manual

Lab Meeting

  • 组会每周一次,内容包括工作汇报和文献讨论会议open,欢迎实验室内外人员参加并给talk
    • 工作汇报:2人
    • 文献讨论:1~2人
  • 任务分配:每位组员轮流进行工作汇报和文献讨论,具体请查看Lab Calendar
  • 资源共享:组会内容包括PPT和文献需共享至dropbox

Computer & Network

  • 实验室电脑由课题组统一分配
  • 网络IP申请
  • 如组员离开实验室,需做退还手续

Super-computer

  • 账号申请:
  • 注意事项:

CBB QQ Group

  • 账号授权

Lab Calendar in Google

  • 账号授权

Sharing on DropBox

  • 账号授权

Paper Writing

Writing Templates

  • CBB Manuscript Template Doc ico.gif
    • Structured Sections (Introduction, Methods, Results, Discussion)
    • Double Space
    • Text: Times New Roman, 12pt
    • Figure: Arial Narrow >=12pt, EPS format
  • CBB Cover Letter Template with Electronic Letterhead Doc ico.gif
  • Poster with regular size (height 118.9cm, width 84.1cm) Ppt ico.gif
  • CBB PowerPoint Template Ppt ico.gif

Writing Skills

Important Rules

注意

  • 请不要抄袭整段或者整句的文字,这种行为后果极其严重,即使文章已被接收发表也会撤回,且取消你的学位、影响你的发展。
  • 假如你无从改动,切记用醒目颜色标记、斜体加引号、并且引上相关的文献。

基本

  • 请使用本组的论文模板:CBB Manuscript Template Doc ico.gif
  • 字体:Times New Roman, 12pt
  • 行距:双倍Double Space

时态

  • 使用一般现在时态,除了下述情况:
  • 当回顾相关研究工作,可能会用到过去时态,例如:In the past several years, efforts have been devoted to XXX.
  • 在某些情况下,真理性的结果需使用一般现在时态,即使所属的从句使用过去式,例如:Wang and colleagues performed comprehensive analyses and discovered that XXX is closely correlated with YYY.

图表

  • 图:图中字体建议使用Arial Narrow >=12pt, EPS或TIFF格式,建议EPS
  • 表:使用三线法画表
  • Figure legends和表的脚注:这部分包括可包含一到多个句子,注意都用被动语态,不出现”We“或”I“作为主语出现的句子
  • 能用图的就别用表
  • 图、表决定了你文章能否接收的一多半可能,多花点时间改进图表一点不为过,把图表所需展示的最重要结论能否一目了然的告诉读者
  • 另外,大多数读者只看图表

Writing Tips

Title

  • 至关重要,好的名字会吸引Editor和Reviewer更易接收你的文章

Abstract

  • 至关重要,Editor可能只读摘要就决定是否送审还是直接据掉
  • 另外,大多数读者只看摘要,然后决定是否看全文

Introduction

包括三部分:

  1. 讲述你论文所属的领域及其该研究的重要性,
  2. 回顾国内外相关研究的进展及其不足
  3. 基于这些不足,提出你论文要干什么或提出新的假说(创新点),论述采取主要的方式(不谈论结果)

Results

  1. 假如可以的话,可分为多个子部分
  2. 在描述每个Result前,介绍下你为什么这么做,有什么假说或论点支持吗?
  3. 注意区分Results和Discussion,凡是能从图、表中直接观测到的为Results,其它的皆为Discussion
  4. 描述A与B存在有相关性或存在显著差异等结果时,建议使用相关统计检验,且采用下述描述方式:A is significantly correlated with B (R=XXX, P-value=XXX; Fig. XXX).

Discussion

  1. 也可分为多个子部分
  2. 对Results中多个子部分的多个结果进行关联讨论
  3. 探讨结果为什么是这样,可能产生的原因及其后果,以及和现有相关研究是否一致;如果不一致(不用害怕不一致,不一致才是创新,都一致就没新发现了),分析其原因;
  4. 提出本文研究的不足之处(例如,数据量少、样本单一、方法可能有偏差、模拟结果而非真实情况等)或对后续研究的影响。

Methods

相对好写,不赘述

Revision

Write your manuscript logically, clearly and concisely.

  • Peer Revision: ask lab members to perform peer revisions at least three rounds.
  • PI Revision: Please make sure that your manuscript does not include any typos or grammatical errors, like "We does XXX".

I reserve the right to decline revising your manuscript if it contains low-level mistakes/typos or obvious bad logic.

在发给PI进行修改前,论文稿件务必需经实验室内部人员修改,且确保没有单词错拼、语法不符等低级错误以及逻辑混乱等明显错误,否则PI有权对此类稿件拒绝修改。

Submission

Before submitting the manuscript to a journal, you must obtain approval from PI, including

  • which journal to be submitted
  • authorship and affiliations
  • authors' contribution and order

Code of Conduct for Scientific Practice

The Netherlands Code of Conduct for Scientific Practice Pdf.gif

Valuable Traits

  • Think independently
  • Work collaboratively
  • Open-minded
  • Embrace failure
  • Shoot for the moon. Even if you miss, you will land amongst the stars.
  • The future depends on what we do in the present.

Computer Science

  • Export results into file: e.g., select page_title from ricepage where (page_title like 'BGI%' or page_title like 'Os%') and page_title not like '%/%' into outfile '/tmp/title.list';
  • Time synchronization: ntpdate 2.cn.pool.ntp.org
  • Cron and Shell can not share environment variables. When a c++ program that uses specific variables is set to run by cron, it needs to export variables.

To Graduates

Elements of a successful graduate career

Do you know how to survive your graduate study? Pdf.gif

Stipend

The following is the starting stipends for graduates (which may vary from year to year), with exact amount dependent on time commitment and performance.

MS students

  • MS 1st year (硕士一年级): RMB 200/month
  • MS 2nd year (硕士二年级): RMB 900/month
  • MS 3rd year (硕士三年级): RMB 1100/month

Plus additional stipends provided by Office of Graduates. Stipends for MS students in 1st year who have classes in YuQuan Road are covered by Office of Graduates.

PhD candidates

  • PhD 1st year (博士一年级): RMB 1400/month
  • PhD 2nd year (博士二年级): RMB 1600/month
  • PhD 3rd year (博士三年级): RMB 1800/month

Plus additional stipends provided by Office of Graduates.

Thesis

  • Thesis proposal (开题报告) in November~December for MS 2nd and PhD 1st students.
"Always make it clear to the reader what you are proposing and why it is important." From: http://www.sass.uottawa.ca/writing/kit/grad-thesis-proposal.pdf
  • Mid-Term Evaluation (中期考核) in November~December for MS 3rd and PhD 2nd/3rd students.
  • Thesis defense (学位论文答辩), normally in May~June as long as qualifications and requirements are met.
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